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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAGgtaactcaatgaccgatgtgtaattctcacttcccagtgaaatcatcaaatatatatcagtttctcatattaccgtgtttcaattgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G14030.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124752456|gb|EH842586.1|EH842586
EST:     AAACCTTTGGACGTGGCCAAG
genomic: AAACCTTTGGACGTGGCCAAG
EST: gi|116459820|gb|EG502412.1|EG502412
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|125234229|gb|EL248314.1|EL248314
EST:     AAACCTTTGGACGTGGCCAAG
genomic: AAACCTTTGGACGTGGCCAAG
EST: gi|86022138|gb|DR317891.1|DR317891
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|116459825|gb|EG502417.1|EG502417
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|164236015|gb|ES059156.1|ES059156
EST:     AAACCTTTGGACGTGGCCAAG
genomic: AAACCTTTGGACGTGGCCAAG
EST: gi|86022144|gb|DR317897.1|DR317897
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|164048468|gb|ES140634.1|ES140634
EST:     AACCTTTGGACGTGGCCAAG
genomic: AACCTTTGGACGTGGCCAAG
EST: gi|125133448|gb|EL174920.1|EL174920
EST:     AAACCTTTGGACGTGGCCAAG
genomic: AAACCTTTGGACGTGGCCAAG
EST: gi|116459826|gb|EG502418.1|EG502418
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|124926281|gb|EL004153.1|EL004153
EST:     ACGTGGCCAAG
genomic: ACGTGGCCAAG
EST: gi|116459815|gb|EG502407.1|EG502407
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|124759017|gb|EH849147.1|EH849147
EST:     CCTTTGGACGTGGCCAAG
genomic: CCTTTGGACGTGGCCAAG
EST: gi|124927602|gb|EL005326.1|EL005326
EST:     AAACCTTTGGACGTGGCCAAG
genomic: AAACCTTTGGACGTGGCCAAG
EST: gi|116459814|gb|EG502406.1|EG502406
EST:     AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: gi|124746719|gb|EH837031.1|EH837031
EST:     CTTTGGACGTGGCCAAG
genomic: CTTTGGACGTGGCCAAG