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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGgtagctttgaattgtcttgtgcttttgcttcttttagctacaaattaggatgtgtaactgtgtgtccgtttttagagtttgccttgttgatgggaaagtgtttatttcatgttcatggcaatag

Basic information

species Arabidopsis thaliana
transcript AT5G13520.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13520.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G155580_T03 (Zea mays), 5'ss of exon 1
AGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGgtagctt--tgaattgtcttgt-gcttttgcttcttttagctacaaat--taggatgtgtaactgtgtgtccgtttttagagtttgccttgttgatgggaaagtgtttatttcatgttcatggcaatag
 || ||  | || ||||| ||||| || || ||||||||||||||||||||||| ||| |||| ||||| |  | ||||||| | |||||| | || |||||   |      |   | |||| | | |||   || | |||    |    |    | || ||    ||     |  | | | ||     ||| |  || |  |                          
GGATGCTGCAGGGGCTCAGGTTGTGGCCCATGAGCTCGCACATAGCTGGACTGGCAATCTGATTACTAACAAAACCAATGAAGATTTCTGGCTAAACGAGgtgagtgaacacacgttgttgttgatgttgtcgctgtcagcctttagccctttactatgcaatca-gtagttttcctcaaaattcaa--tgtagtaggaatcg--------------------------

upper sequence: AT5G13520.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G38780.1 (Glycine max), 5'ss of exon 1
AGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGgtagctttgaattgtcttgtgcttttgcttcttttagctacaaattaggatgtgtaactgtgtgtccgtttttagagtttgccttgttgatgggaaagtgtttatttcatgttcatggcaatag
 || ||||| || || || ||||| ||||||||||| || || || ||||||||||||||||||||||| |  | ||||||||| ||||||||||||||||||   ||    |  || |||| |||   | |  | || |  |  |  |||   |     ||  |  | ||||||                                                 
GGATGCCACCGGTGCACAGGTTGTGGCTCACGAGCTTGCTCACAGTTGGACTGGGAATTTGATCACTAACAAGACCAATGAACATTTCTGGTTGAATGAGgtaatattctccta-ctagtgcgttttgatttgatggcgatca--tgagattgttgttcttgattttggttttag-------------------------------------------------

upper sequence: AT5G13520.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv13s0067g03300.t01 (Vitis vinifera), 5'ss of exon 1
AGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGgtagctttgaattgtcttgtgcttttgcttcttttagctacaaattaggatgtgtaactgtgtgtccgtttttagagtttgccttgttgatgggaaagtgtttatttcatgttcatggcaatag
 || || | |||||| ||||| || || || ||||| || ||||||||||| |||||| ||||||| || |  || |||||||| || |||||||||||||||      | |||| || |    ||  |||   | | |     |  |||   |   |    ||       ||    ||||  ||||           ||||||||   |              
GGATGCAAGTGGAGCACAAGTGGTGGCACATGAGCTTGCTCATAGCTGGACGGGGAATCTGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgtataacatatttgttttctctgattaattcacatggttttgtttatggaatagatgcaaaatgaattgaattgagttttggtttgtc----------tgtttattctgt--------------