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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccctaatgaagtatttgtcaaaatgctgcatgaaacgccactattttcatttgtatcacctattatacttttgttattgccagttgttacattaatggccaatattcgaactaactcttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT

Basic information

species Arabidopsis thaliana
transcript AT5G13030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os06g21600.1 (Oryza sativa), 3'ss of exon 5
gtaattccctaatgaagtatttgtcaaaatgctgcatgaaacgccactattttcatttgtatcacctattatacttttgttattgccagttgttacattaatggccaatattcgaactaactcttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT
                                                          |||      |||||    |  ||  |  ||||     |||| ||    || |  | || ||          ||  |   |  |   ||| |||   |||||  |||| ||||| || |||  |||  | ||||| ||||||||||| ||||| |||||||||||||||||||| || ||||||||  |
----------------------------------------------------------gtaaatatcattatgtgctattttctttcagtctactcattgatatttaaaaggctaagtattctccccttttaatccttggttacagCCTGGGCAGTTGAGGTTGCAGAGCGCACTGCTTTCTTGATAGCAAGGTGGCAAGGTGTTGGTTTTACCCATGGTGTGCTCAACACGGATAATATGAGTGT

upper sequence: AT5G13030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G158595_T02 (Zea mays), 3'ss of exon 5
gtaattccctaatgaagtatttgtcaaaatgctgcatgaaacgccactattttcatttgtatcacctattatacttttgttattgccagttgttacattaatggccaatattcgaactaactcttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT
                                              | | | || |||||  ||| | || |    ||| | |||  | |  | |       |  || |    ||||||||  ||        |  |||  |  ||| |||   |||||  | || ||| | || |||  |||  | || |||||||||||||| || |||||||||||||| || ||||||||||| |||||  |
---------------------------------------------gcaaatatc-tttgtgccacattttgt----ttgct-ttgaaaatcctcat-----cgatcatttggggaactaacctttcctgacaatccattgcaacagCTTGGGCAGTTGAGGTGGCGGAGAGGACTGCTTACTTGATAGCTAGATGGCAAGGTGTTGGCTTCACCCATGGTGTACTTAACACTGACAACATGAGTGT

upper sequence: AT5G13030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA20G39090.2 (Glycine max), 3'ss of exon 2
gtaattccctaatgaagtatttgtcaaaatgctgcatgaaacgccactattttcatttgtatcacctattatacttttgttattgccagttgttacattaatggccaatattcgaactaactcttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT
                                |   | |||  |      ||| | |  | |    | | || || |  | ||||     | ||  ||| |       |||     |   || |||     | ||  |||||| ||||||| | || || |||||||||||||| ||| || |  |||| |||||||| || || |||||||| ||||| ||||| ||||| || || ||||||||
--------------------------------tttttaaaaatc------tttgaatcttctggattgtaatgctgtcttcattgtattgtattgtattgac------tatctatcccttctttttaatggtgtt--ttatatcagCATGGGTGGTGGAGATTGCTGAGCGTACTGCTTCCCTGATTGCTAGATGGCAGGGGGTTGGTTTCACTCATGGCGTGCTGAACACGGATAACATGAGCAT

upper sequence: AT5G13030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA10G44280.1 (Glycine max), 3'ss of exon 2
gtaattccctaatgaagtatttgtcaaaatgctgcatgaaacgccactattttcatttgtatcacctattatacttttgttattgccagttgttacattaatggccaatattcgaactaactcttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT-----------------------------------------------------
                                                                                                                                                    ||| | || || |||||||||||||| ||| || |  |||| ||||| || || || |||||||| ||||||||||| ||||| || || ||||||||                                                     
---------------------------------------------------------------------------------------------------------------------------------------------------gtgggtggtggagattgctgagcgtactgcttccctgattgccagatgacagGGGGTTGGTTTCACTCATGGTGTGCTGAACACGGATAACATGAGCATTTTGGGTCTTACAATAGATTATGGCCCATTTGGATTTTTGGGTGCTTTTGATC

upper sequence: AT5G13030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv06s0004g01360.t01 (Vitis vinifera), 3'ss of exon 5
gtaattccctaatgaagtatttgtcaaaatgctgcatgaaacgccactattttcatttgtatcacctattatacttttgttattgccagttgttacattaatggccaatattcgaactaactc-ttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT
                                                || || | |  | | |   |||| ||  ||||| || |   || ||   ||  |      | || |   |   |  |||    |  | |||| | | ||| |||   || ||  | || || ||||| ||| ||||||||||||| ||||| || || |||||||||||||||||| | ||||||||||| |||||  |
---------------------------------------------gaaatatttaat-atctgaaacattaaacccttgttttttctc-tttttgttttttttttttgtttttgtcttttttggtttcaaatggtgaattgtgtcagCTTGGTCGGTGGAGGTGGCAGAACGTACTGCTTCCTTAGTTGCAAGCTGGCAGGGGGTTGGTTTCACCCATGGTGTGTTGAACACTGACAACATGAGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacattaatggccaatattcgaactaactcttttgcttttttaattatattagCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTTAGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAGCAT
                          taactcttttgctttt  TA-rich tract