1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGATCATATGACCCGTTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAGgtatcttatctttcattgctatatattagtgttttagtgccaaatctccgttttctgatatcatttatttccttttttcaacattgattag
species | Arabidopsis thaliana |
transcript | AT5G13020.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCCTGTTGAG GGGCGTCATGCTTTAGTGTATGATATTAACTCEST: gi|124963557|gb|EL037885.1|EL037885
genomic: TGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCC-TGTTGAGgtatcttatc ... cattgattagGGGCGTCATGCTTTAGTGTATGATATTAACTC
EST: ATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAG GGGCG-CATGCTTTAGTGTAEST: gi|125222120|gb|EL236205.1|EL236205
genomic: ATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAGgtatcttatc ... cattgattagGGGCGTCATGCTTTAGTGTA
EST: ATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAG GGGCGTCATGCTTTAGTGTATGATATTAACT
genomic: ATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAGgtatcttatc ... cattgattagGGGCGTCATGCTTTAGTGTATGATATTAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATCATATGACCCGTTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAGgtatcttatctttcattgctatatattagtgttttagtgccaaatctccgttttctgatatcatttatttccttttttcaacattgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT