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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgattttagattcatttctcgcaatattggtttgtggagcaaatgttatatctaaatcttgcctactgtctttactttcagATGATTCCTTGATGGAGACGTAAGCTAATGAGCGAAGCGTAGAGAAAGGAGCGTGGCCTCTTCTTCTCACGTTTTTTTTTGGTCTCTTTTATGATTCCCA

Basic information

species Arabidopsis thaliana
transcript AT5G11240.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164018394|gb|ES136925.1|ES136925
EST:     TGAGAATGATAATGAATCCGATTTAAGCAGTGACGATGGAAAGGATAAAG                         ATGATTCCTTGATGGAGACGTAAGCTAA
genomic: TGAGAATGATAATGAATCCGATTTAAGCAGTGACGATGGAAAGGATAAAGgtaaatgatt ... ttactttcagATGATTCCTTGATGGAGACGTAAGCTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttgtggagcaaatgttatatctaaatcttgcctactgtctttactttcagATGATTCCTTGATGGAGACGTAAGCTAATGAGCGAAGCGTAGAGAAAGGAGCGTGGCCTCTTCTTCTCACGTTTTTTTTTGGTCTCTTTTATGATTCCCA
                       atctaaa  putative branch site (score: 3)
                                       ctgtctttactttc  putative PPT
              aaatgttatatctaaa  TA-rich tract