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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCGTCCGTCTCCTCTTTCTCCATAGTTTAAAGCTTCGTCGTTCCGTCACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATGgcgagtcttcaattactcagatctgatattaagtttttttctcgttttcgaaatttttgcatcttctcattccgtcatagtttgtatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G09900.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164168390|gb|ES020891.1|ES020891
EST:     ACCAGAATTTCAACTGCTTTGAGTTGATTCTCGTTGGATTTCTCACGATG                         GGAGACAGCGGGAAGCTTGAGGCAAC
genomic: ACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATGgcgagtcttc ... tgtatttcagGGAGACAGCGGGAAGCTTGAGGCAAC
EST: gi|116434451|gb|EG477043.1|EG477043
EST:     ACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATG                         GGAGACAGCGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAG
genomic: ACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATGgcgagtcttc ... tgtatttcagGGAGACAGCGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAG