1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAAAGGCCTGATGGTGATATCGAGATTGACGAAAAGTTTTGGGAAGAGGGTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGATgtaagattgacttaatcagatagagacgaatcagtttagctctgtttcttattatgttctcgttgaattgaag
species | Arabidopsis thaliana |
transcript | AT5G09230.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGAT GTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATGEST: gi|86077317|gb|DR373074.1|DR373074
genomic: GTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGATgtaagattga ... tgaattgaagGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATG
EST: GTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGAT GTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATGEST: gi|86076124|gb|DR371881.1|DR371881
genomic: GTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGATgtaagattga ... tgaattgaagGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATG
EST: GTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGAT GTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATG
genomic: GTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGATgtaagattga ... tgaattgaagGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAGGCCTGATGGTGATATCGAGATTGACGAAAAGTTTTGGGAAGAGGGTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAGTCCTAAAGCCTGATgtaagattgacttaatcagatagagacgaatcagtttagctctgtttcttattatgttctcgttgaattgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG