Sequence
atgc intronic sequence ATGC exonic sequence...ggggatgttgggtctcttagagatttagggtttattatagttcatgcctttgaagtatttggatcgaaatctgtctcatacgaattccttttggttgcagAAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGTAGCTATGGGGATCTCATGGGAGTTTGAGAAGAAGAATGGAGGATCATGG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G08040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164211600|gb|ES170246.1|ES170246EST: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATG AAACTTCTGCGAGCACT
genomic: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttca ... ttggttgcagAAACTTCTGCGAGCACT
EST:
gi|86078856|gb|DR374613.1|DR374613EST: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATG AAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGT
genomic: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttca ... ttggttgcagAAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGT
EST:
gi|164117061|gb|ES058858.1|ES058858EST: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATG AAACTTCTGCGAGCACTTGGTATG
genomic: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttca ... ttggttgcagAAACTTCTGCGAGCACTTGGTATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcctttgaagtatttggatcgaaatctgtctcatacgaattccttttggttgcagAAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGTAGCTATGGGGATCTCATGGGAGTTTGAGAAGAAGAATGGAGGATCATGG
ttcctttt CT-rich tract
aagtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggggatgttgggtctcttagagatttagggtttattatagttcatgcctttgaagtatttggatcgaaatctgtctcatacgaattccttttggttgcagAAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGTAGCTATGGGGATCTCATGGGAGTTTGAGAAGAAGAATGGAGGATCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - -ctcttag
- - - - - - - - - - -gatttag
- - - - - - - - - - - - - - ggtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcgaaa