Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGgtatgatgatagtgagattcgtaaatattcaactcaagaaaagattttggttctggtttgttgtgttcttctttaatcatgtgtacttattgtgtgatcag

Basic information

species Arabidopsis thaliana
transcript AT5G08020.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08020.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G086934_T01 (Zea mays), 5'ss of exon 10
ACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGgtatga--tgatagtgagattcgtaaatattcaactcaagaaaagattttggttctggtttgttgtgttcttctttaatcatgtgtacttattgtgtgatcag
|||||||||||| ||||||||||||||| || ||||||||  | |  ||||| || ||||| ||  | || || || ||  ||   || |||    | |||||  |   | |||    |  |    |   | | ||    |   | | |    |||| ||  || | | | || || |                         
ACCGTGCTTGCACGACCTGTAACAAGAAGGTGACTGAAGCTTTTGGGTCTGGATACTGGTGCGAGGGGTGCCAAAAGAATTACTCTGAGTGCTCGCTGAGgtaaaagccgttagcacaaggctgctaccgttatct----atttggtgtcaaatctgattgtttctctgcgtccttcag------------------------

upper sequence: AT5G08020.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G098714_T01 (Zea mays), 5'ss of exon 10
ACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGgtatgatgatagtgagattcgtaaatattcaactcaagaaaagattttggttctggtttgttgtgttcttctttaatcatgtgtacttattgtgtgatcag
||||||||||||||||||| |||||||| || |||||| |  | |  ||||| || ||||||||  | || || || || |||   ||||||    | |||||  |  | | |      |  ||   | |  ||   |  |    |||||| |    |  |   | | | | |   || |                     
ACCGTGCTTGCAAGACCTGCAACAAGAAGGTGACTGAAACTTTTGGATCTGGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaaaaaatcgtcagcagaagcctgctgctactgttatctatttggtgccaaatc-tgacggtttccctgcgtccttcag-----------------