1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacaacactctttgccttgagcagccttctctatcattgttttaatttgatcatgaagacttataacatatcttctgtacagGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGAAGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTG
species | Arabidopsis thaliana |
transcript | AT5G05470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTTACCCGAGAAGTTAAAGAAACTGGACCTGATGGTGTGGAG GTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGEST: gi|164032641|gb|ES074392.1|ES074392
genomic: TGCTCTTACCCGAGAAGTTAAAGAAACTGGACCTGATGGTGTGGAGgtaacaacac ... ttctgtacagGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTG
EST: GATGGTGTGGAG GTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTG
genomic: GATGGTGTGGAGgtaacaacac ... ttctgtacagGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTG
tctctatcattgttttaatttgatcatgaagacttataacatatcttctgtacagGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGAAGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTG
ttataac putative branch site (score: 2)
tatcttct CT-rich tract
atcattgttttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaacactctttgccttgagcagccttctctatcattgttttaatttgatcatgaagacttataacatatcttctgtacagGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGAAGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA