1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gattcaactggttaaactccggtttacttaattaatctggttaagtacgtgtccaacgaaattgaaccggttcctctgcttactattatacatttttcagCGGAGATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAGCTCAGTACGGAGTGCAGCTAGAGAATACGGTGAGAGATCGTTTGGCTGA
species | Arabidopsis thaliana |
transcript | AT5G05270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATGATGACTTCTTCGACGCCCTTGCCTCCG CGGAGAAGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAGEST: gi|116450996|gb|EG493588.1|EG493588
genomic: CGATGATGACTTCTTCGACGCCCTTGCCTCCGgtaatcttaa ... catttttcagCGGAGATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAG
EST: CGGAAAAGAACTCGCCGGCGATGATGACTTCTTCGACGCCCTTGCCTCCG CGGAGATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAG
genomic: CGGAAAAGAACTCGCCGGCGATGATGACTTCTTCGACGCCCTTGCCTCCGgtaatcttaa ... catttttcagCGGAGATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAG
tacgtgtccaacgaaattgaaccggttcctctgcttactattatacatttttcagCGGAGATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAGCTCAGTACGGAGTGCAGCTAGAGAATACGGTGAGAGATCGTTTGGCTGA
tgcttac putative branch site (score: 2)
catttttc putative PPT
ttactattatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattcaactggttaaactccggtttacttaattaatctggttaagtacgtgtccaacgaaattgaaccggttcctctgcttactattatacatttttcagCGGAGATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAGCTCAGTACGGAGTGCAGCTAGAGAATACGGTGAGAGATCGTTTGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC