Sequence
atgc intronic sequence ATGC exonic sequence...gcattactcaggctcagaatatttggctatgactattgaaattaatgaaggaagctatttctcttcacgcacttataagaaaccgatctttttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAGCTAGATGGTGAGAAAGGAAGTGCCAACAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G04750.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86082858|gb|DR378617.1|DR378617EST: GACGATAAAGGTCGTGTGCTCAGCGAAGAGGWACGCGCGAAAGAGAGCAT AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GACGATAAAGGTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATgtatatccag ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaggaagctatttctcttcacgcacttataagaaaccgatctttttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAGCTAGATGGTGAGAAAGGAAGTGCCAACAAG
tctttttgtt CT-rich tract
ttataagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcattactcaggctcagaatatttggctatgactattgaaattaatgaaggaagctatttctcttcacgcacttataagaaaccgatctttttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAGCTAGATGGTGAGAAAGGAAGTGCCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - -tatttgg
- - - - - - - - - - - - - - - - - - - - - - - gaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccga