Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTATCGACTCGAGGACCGGCGATTCGGTACTTCAGTGACGATAAAGGTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttcatcgtcgactttttctaactcttgatttatgtatcgatgctataatagtttgtttagccgctgttgcttatttggattcaatgtttggtt...

Basic information

species Arabidopsis thaliana
transcript AT5G04750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125256534|gb|EL270619.1|EL270619
EST:     CGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: CGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028777|gb|DR324530.1|DR324530
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028763|gb|DR324516.1|DR324516
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028728|gb|DR324481.1|DR324481
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028740|gb|DR324493.1|DR324493
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028720|gb|DR324473.1|DR324473
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028745|gb|DR324498.1|DR324498
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028726|gb|DR324479.1|DR324479
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028714|gb|DR324467.1|DR324467
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028736|gb|DR324489.1|DR324489
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028771|gb|DR324524.1|DR324524
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028721|gb|DR324474.1|DR324474
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028706|gb|DR324459.1|DR324459
EST:     GTCGTGTGCTCAGCGAAGAGGAACGC-CGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028782|gb|DR324535.1|DR324535
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|124724896|gb|EH816298.1|EH816298
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAGAGACTGGAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAG
EST: gi|86028753|gb|DR324506.1|DR324506
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028738|gb|DR324491.1|DR324491
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028716|gb|DR324469.1|DR324469
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028723|gb|DR324476.1|DR324476
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028755|gb|DR324508.1|DR324508
EST:     GTCGTGTGCTCAGCGAAGAGGAAAGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028692|gb|DR324445.1|DR324445
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028744|gb|DR324497.1|DR324497
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028741|gb|DR324494.1|DR324494
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028751|gb|DR324504.1|DR324504
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028785|gb|DR324538.1|DR324538
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028772|gb|DR324525.1|DR324525
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028743|gb|DR324496.1|DR324496
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028733|gb|DR324486.1|DR324486
EST:     GTCGTGTGCTC-G--AAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028709|gb|DR324462.1|DR324462
EST:     GTCGTGTGCTCAGCGAAGAGGAACGC-CGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028760|gb|DR324513.1|DR324513
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028781|gb|DR324534.1|DR324534
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGACAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028776|gb|DR324529.1|DR324529
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028731|gb|DR324484.1|DR324484
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028718|gb|DR324471.1|DR324471
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|164031387|gb|ES088576.1|ES088576
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATANCCAG                         AAAATGGAGAGGGAAAGACTGGAGAA
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAA
EST: gi|86028748|gb|DR324501.1|DR324501
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028703|gb|DR324456.1|DR324456
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028724|gb|DR324477.1|DR324477
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028768|gb|DR324521.1|DR324521
EST:     CGTGTGCTCAGCGAAAGAGGAACGCGCGAAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: CGTGTGCTCAGCG-AAGAGGAACGCGCG-AAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028727|gb|DR324480.1|DR324480
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028739|gb|DR324492.1|DR324492
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAA
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAA
EST: gi|125109904|gb|EL162125.1|EL162125
EST:     GAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAA
genomic: GAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAA
EST: gi|86028707|gb|DR324460.1|DR324460
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028774|gb|DR324527.1|DR324527
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028780|gb|DR324533.1|DR324533
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028734|gb|DR324487.1|DR324487
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028778|gb|DR324531.1|DR324531
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86079348|gb|DR375105.1|DR375105
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028779|gb|DR324532.1|DR324532
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028766|gb|DR324519.1|DR324519
EST:     GTCGTGTG--CAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028750|gb|DR324503.1|DR324503
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028765|gb|DR324518.1|DR324518
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028702|gb|DR324455.1|DR324455
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028769|gb|DR324522.1|DR324522
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028759|gb|DR324512.1|DR324512
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028699|gb|DR324452.1|DR324452
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028757|gb|DR324510.1|DR324510
EST:     TCGTGTGCTCAGCGAAGAGGGAACGC-CGAAAGAGAGCATGTATATCCAG                         AAAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAA
genomic: TCGTGTGCTCAGCGAAGAGG-AACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAA-TGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAA
EST: gi|86028730|gb|DR324483.1|DR324483
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|164150687|gb|ES028328.1|ES028328
EST:     CGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: CGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028697|gb|DR324450.1|DR324450
EST:     GTCGTGTGC--AGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028770|gb|DR324523.1|DR324523
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028752|gb|DR324505.1|DR324505
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028722|gb|DR324475.1|DR324475
EST:     GTCGTGTGCTCAGAGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|125263154|gb|EL277239.1|EL277239
EST:     CGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: CGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028773|gb|DR324526.1|DR324526
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGWAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028767|gb|DR324520.1|DR324520
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACACGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028756|gb|DR324509.1|DR324509
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028708|gb|DR324461.1|DR324461
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028729|gb|DR324482.1|DR324482
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028700|gb|DR324453.1|DR324453
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028746|gb|DR324499.1|DR324499
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028742|gb|DR324495.1|DR324495
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGACGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAA
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGA-GAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAA
EST: gi|86028735|gb|DR324488.1|DR324488
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028758|gb|DR324511.1|DR324511
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|124958865|gb|EL033579.1|EL033579
EST:     CATGTATATCCAG                         AAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: CATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028698|gb|DR324451.1|DR324451
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028704|gb|DR324457.1|DR324457
EST:     GTCGTGTGCTCAGAGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGAT
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAA-TGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGAT
EST: gi|86028696|gb|DR324449.1|DR324449
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028705|gb|DR324458.1|DR324458
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028764|gb|DR324517.1|DR324517
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
EST: gi|86028715|gb|DR324468.1|DR324468
EST:     GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAG                         AAAATGGAGAGGGAAAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG
genomic: GTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttc ... tttgttgtagAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGGTATCGACTCGAGGACCGGCGATTCGGTACTTCAGTGACGATAAAGGTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGgttcttcttcatcgtcgactttttctaactcttgatttatgtatcgatgctataatagtttgtttagccgctgttgcttatttggattcaatgtttggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctaactc