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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggattcgtccataactgtacttttttgcaagtctttgttgtaatttcatatgttaagcacttcctatctttccctttgtagTCGAAAAGACTTTGGTCTGATTGTGGGTGTGGATGACAAAGGTGACGGTTACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G04290.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164190920|gb|ES069069.1|ES069069
EST:     ATATAATCTAGTTTGTTTCAG                         TCGAAAAGACTTTGGTCTGATTGTGGGTGTGGATGACAAAGGTGACGGTTA
genomic: ATATAATCTAGTTTGTTTCAGgtaaggattc ... ccctttgtagTCGAAAAGACTTTGGTCTGATTGTGGGTGTGGATGACAAAGGTGACGGTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagtctttgttgtaatttcatatgttaagcacttcctatctttccctttgtagTCGAAAAGACTTTGGTCTGATTGTGGGTGTGGATGACAAAGGTGACGGTTACAAG
                               cacttcctatctttcc  CT-rich tract
              taatttcatatgttaa  TA-rich tract