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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtagtccactttaaaccttcaagatattcttatattggatataatgtgcaacccattatgttactgaattgctcatactctttctgttaatgcgatagaaatatccatgtgtgttgtctgctttttgttccagTGGTAAACAAGTTCCATGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCGCAGAAATGAAAGTCTGGATTGCATCTTCATTACA

Basic information

species Arabidopsis thaliana
transcript AT5G03770.1
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctgttaatgcgatagaaatatccatgtgtgttgtctgctttttgttccagTGGTAAACAAGTTCCATGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCGCAGAAATGAAAGTCTGGATTGCATCTTCATTACA
      tgttaat  putative branch site (score: 3)
                                      tctgctttttgttcc  putative PPT
                atagaaatat  TA-rich tract