Sequence
atgc intronic sequence ATGC exonic sequence...taatatcttgagatatttggtcttgtcttgatgtaaatgtgtttacttactttatcttgagcttgtttgagttgtttttttggggttggaatgtttccagGGATTTCGAAAGATTGATACTGACAAGTGGGAATTCGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAGAACATTCATCGTCGTCGATCAC
Basic information
species | Arabidopsis thaliana |
transcript | AT5G03720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877319|gb|AU238150.1|AU238150EST: ATTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTAT GGATTTCGAAAGATTGATACTGACAAGTGGGAATTCGCTAACGAGGCTTTC
genomic: ATTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATgtaatcatct ... atgtttccagGGATTTCGAAAGATTGATACTGACAAGTGGGAATTCGCTAACGAGGCTTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttactttatcttgagcttgtttgagttgtttttttggggttggaatgtttccagGGATTTCGAAAGATTGATACTGACAAGTGGGAATTCGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAGAACATTCATCGTCGTCGATCAC
tacttac putative branch site (score: 1)
tgtttcc putative PPT
ttgttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatatcttgagatatttggtcttgtcttgatgtaaatgtgtttacttactttatcttgagcttgtttgagttgtttttttggggttggaatgtttccagGGATTTCGAAAGATTGATACTGACAAGTGGGAATTCGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAGAACATTCATCGTCGTCGATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - -tatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg