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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttgctatctaggacgacataaagtgtgaattttcttatgaccagtttatggtataagattagatggtacaatctcatgaaatttgtgtccatggacagATTGAGACAATTTTCAAAGGGAAAGCATGCCTCGAAATTAGAGATTCTGCGACGGGCTTGACAAAGCGGTTGGCGCAAACTGCTCAGGAAACATTTGGTG

Basic information

species Arabidopsis thaliana
transcript AT5G03540.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03540.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 3'ss of exon 6
-------gtttgctatctaggacgacataaagtgtgaattttcttatgaccagtttatggtataag-attagatggtacaatctcatgaaatttgtgtccatggacagATTGAGACAATTTTCAAAGGGAAAGCATGCCTCGAAATTAGAGATTCTGCGACGGGCTTGACAAAGCGGTTGGCGCAAACTGCTCAGGAAACATTTGGTG
        | | ||  |||       |  | ||  |||  ||   ||     | ||  | |  | | ||||  |||   ||  |  |   |||| | |  || | ||||| || ||||||||||| || ||||| |||   ||||||||||| |||||   ||| |||||||||||| |||| || |||||||| ||||| |||||||
ggccacaatgtcctgccta---tttgactaggttcgaaactttgaattgt--gcttcagattcatgtattatctgg---aaattattattatttttttttattggcagATAGAAACAATTTTCAAGGGCAAAGCTTGCACTGAAATTAGAGAATCTGCATTGGGTTTGACAAAGCGGCTGGCCCAGACTGCTCAAGAAACCTTTGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatggtataagattagatggtacaatctcatgaaatttgtgtccatggacagATTGAGACAATTTTCAAAGGGAAAGCATGCCTCGAAATTAGAGATTCTGCGACGGGCTTGACAAAGCGGTTGGCGCAAACTGCTCAGGAAACATTTGGTG
        tataagatta  TA-rich tract