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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAAAAAATGGCGATGGCGAGAAGCATCTCTTACATCACCTCTACTCAGCTTCTCCCTCTTCATCGTCGTCCCAACATCGCCATCATCGATGTCAGgtataacataatcgatttatttccgtcgattttagtcactaatctgatcctttaccaaattttagttcgaatcaatcccgattattgttcttaggtttga...

Basic information

species Arabidopsis thaliana
transcript AT5G03455.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086423|gb|DR382182.1|DR382182
EST:     CAGCTTCTCCCTCTTCATCGTCGTCCCAACATCGCCATCATCGATGTCAG                         GGATGAAGAGMGGAATTATGACGGGCMTATAGCTGGATCGCTACACTATGC
genomic: CAGCTTCTCCCTCTTCATCGTCGTCCCAACATCGCCATCATCGATGTCAGgtataacata ... tgtttttaagGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
EST: gi|125035559|gb|EL107828.1|EL107828
EST:     CATCGCCATCATCGATGTCAG                         GGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
genomic: CATCGCCATCATCGATGTCAGgtataacata ... tgtttttaagGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
EST: gi|125240174|gb|EL254259.1|EL254259
EST:     TCGCCATCATCGATGTCAG                         GGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
genomic: TCGCCATCATCGATGTCAGgtataacata ... tgtttttaagGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
EST: gi|125010372|gb|EL082641.1|EL082641
EST:     CGTCGTCCCAACATCGCCATCATCGATGTCAG                         GGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
genomic: CGTCGTCCCAACATCGCCATCATCGATGTCAGgtataacata ... tgtttttaagGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
EST: gi|125187686|gb|EL202640.1|EL202640
EST:     CGCCATCATCGATGTCAG                         GGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
genomic: CGCCATCATCGATGTCAGgtataacata ... tgtttttaagGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
EST: gi|124751523|gb|EH841653.1|EH841653
EST:     CGTCGTCCCAACATCGCCATCATCGATGTCAG                         GGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC
genomic: CGTCGTCCCAACATCGCCATCATCGATGTCAGgtataacata ... tgtttttaagGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGC