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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaactatgcgatatttgctgatggattgtaataaaataaacaaactccag

Basic information

species Arabidopsis thaliana
transcript AT4G40050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 6
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaactatgcgatatttgctgatggattgtaataaaataaacaaactccag
|| ||||||| ||||| || |  || || || || |||||| |  | ||||| ||| |  | || ||||| || | ||| | |||||||||||||||||||||| |||||| | ||      ||  | |||     ||  ||    | ||||  | ||  || |||        |   || ||   |  |    |     
GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGgcaggtttgtcagaacttaatcttag----cttggtagatgaaaatcattatcatgagtattt-tgttatttttcagagccaaacttactaccctggattgccca---

upper sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os09g29470.3 (Oryza sativa), 5'ss of exon 6
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaactatgcgatatttgctgatggattgtaataaaataaacaaactccag-
|| ||||||| ||||| || |  || || || || |||||| |  | ||||| ||| |  | || ||||| || | ||| | |||||||||||||||||||||| |||||| | ||      ||  | |||     ||  ||    | ||||  | ||  || |||        |   || ||   |  |    |      
GTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcagaacttaatcttag----cttggtagatgaaaatcattatcatgagtattt-tgttatttttcagagccaaacttactaccctggattgcccatgcc

upper sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G115304_T01 (Zea mays), 5'ss of exon 6
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtc--tgatagtttctctcagtaactatgcgatatttgctgatggattgtaataaaataaacaaactccag
|| ||||||| ||||| || | ||| ||||| || |||||| |  | ||||| ||| |  | |||||||| || | ||||| |||||||||||||||||||||| |||||| | ||   ||      || |  |  |   |    | |||  |  || | | | | |  |  |||   | ||  |   |   ||  |     
GTCCAAACAATCTTTATCCAGATGATCTAATTCCATTTACAAGATATCCACTGTTCCTTGTAATTGATAGTGAAAATAGCCATGCATTCAAGgcaggtttgtcagaacttaatcttggcttgtagaagaaaaccattaccatcggcactctattgcttttctaaagtaac--atg---tttaccaggttgcccatgc-----

upper sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G30980.1 (Glycine max), 5'ss of exon 6
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagt--aactatgc--gatatttgctgatggattgtaataaaataaacaaactccag
||||||| || || ||||||||||| || ||||| || ||  ||||||| |||||| |||| ||||| || || |  |||| |||||||||||||||||||||| |||| ||   ||    | | |     | |||  |  ||   |  |   | || | |  |||||||  |  | || | ||||   |              
GTTCAAATAATCTCTACCCTGGTGATCTTATCCCCTTCACTAGGAAACCTCTTTTCCTGATTATTGACAGTGATAACAGCCATGCATTCAAGgcaggtttgtcaaaactcagaacttg---tgtataagttgcctgtgaactttgttaggcggagctgttcaggatatttattccttgaatctaattttacttgt---------

upper sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G14190.1 (Glycine max), 5'ss of exon 7
GTTCAAACAACCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaa--ctatgcgatatttgctgatggattgtaataaaataaacaaactccag
||| ||| || || |||||||| || || ||||| |||||  ||||||| |||||||| || ||||| || || |  |||| |||||||||||||||||||||| |||| ||   ||    | | |     | |||  |  ||   |   ||   || | |                                         
GTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAGgtttgtcaaaactcagaacttg---tgtataagttgcctgtgaactttgttagatagagctgttcag---------------------------------------

upper sequence: AT4G40050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0191g00140.t01 (Vitis vinifera), 5'ss of exon 6
GTTCAAACAA---CCTTTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGACACTAGCCGTGCATTCAAGgcaggtttgtcataacttagtgtttcatttctctggagagtctgatagtttctctcagtaactatgcgatatttgctgatggattgtaataaaataaacaaactccag
||||||| ||   |||||||||||||||  |||| ||||||||  | | ||||||||||||||| |||||||| ||||  |||| |||||||||||||||||||||| ||||| || | | | ||  ||  |  |  | | | | |    ||| |  | |      | |     | | |  || |    | || | |      
GTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGgcaggtttgtcaaaactt-gtatataacttg-ctacactgcttcaaattattctacagcag-tgtatagcttctaa-actaggtgttacttctttcaaaagatg----