1 5' 3' | 2 5' 3' | 3 5' 3' |
gttttctaatttcattatcacatttttccataatcatcatcatttttttctaaatgaattgtcttgtgttgttgtttcagATATTTAGGGGAAGACAGAGCACAATTGGTGTTACTGAAGAAGACAGGACATGCGATTAATGAAGAGAAACCAAAAGAGATGTACAAACACATGAAATCT
species | Arabidopsis thaliana |
transcript | AT4G39955.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGAGGAAGATCAAGTATTTCCAGTTGAATTAGCTCATCGATTGAAAAG ATATTTAGGGGAAGACAGAGCACAATTGGTGTEST: gi|116450161|gb|EG492753.1|EG492753
genomic: GGAGAGGAAGATCAAGTATTTCCAGTTGAATTAGCTCATAGATTGAAAAGgttttctaat ... gttgtttcagATATTTAGGGGAAGACAGAGCACAATTGGTGT
EST: GGAGAGGAAGATCAAGTATTTCCAGTTGAATTAGCTCATAGATTGAAAAG ATATTTAGGGGAAGACAGAGCACAATTGGTGTTACTGAAGAAGACAGGACA
genomic: GGAGAGGAAGATCAAGTATTTCCAGTTGAATTAGCTCATAGATTGAAAAGgttttctaat ... gttgtttcagATATTTAGGGGAAGACAGAGCACAATTGGTGTTACTGAAGAAGACAGGACA
ttccataatcatcatcatttttttctaaatgaattgtcttgtgttgttgtttcagATATTTAGGGGAAGACAGAGCACAATTGGTGTTACTGAAGAAGACAGGACATGCGATTAATGAAGAGAAACCAAAAGAGATGTACAAACACATGAAATCT
ttctaaa putative branch site (score: 2)
ttgtttc putative PPT
atcatttttttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctaatttcattatcacatttttccataatcatcatcatttttttctaaatgaattgtcttgtgttgttgtttcagATATTTAGGGGAAGACAGAGCACAATTGGTGTTACTGAAGAAGACAGGACATGCGATTAATGAAGAGAAACCAAAAGAGATGTACAAACACATGAAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG