Sequence
atgc intronic sequence ATGC exonic sequencegtagtgaatcttgcaaatgtttaagctttgcttgttttgtgatgcgagactataaccaaatgtttcacactgtttttgttgaacagGTTGGGGTGTTCACATTCGTAGCAAGGACGGTAAAAAGATGTGTACTCTGGAAGAGAGTTTGGTCGTGTAGTTACGAGAAATTTTTTGTTTTATTTCGCT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G39560.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164043388|gb|ES154060.1|ES154060EST: ATGAATTCGTGTGTGCTCGTTCCGCTAATGTTTGATGAATTGTTGACTCG GTTGGGGTGTTCACATTC
genomic: ATGAATTCGTGTGTGCTCGTTCCGCTAATGTTTGATGAATTGTTGACTCGgtagtgaatc ... tgttgaacagGTTGGGGTGTTCACATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttttgtgatgcgagactataaccaaatgtttcacactgtttttgttgaacagGTTGGGGTGTTCACATTCGTAGCAAGGACGGTAAAAAGATGTGTACTCTGGAAGAGAGTTTGGTCGTGTAGTTACGAGAAATTTTTTGTTTTATTTCGCT
ctataac putative branch site (score: 3)
ctgttttt putative PPT
aaatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtgaatcttgcaaatgtttaagctttgcttgttttgtgatgcgagactataaccaaatgtttcacactgtttttgttgaacagGTTGGGGTGTTCACATTCGTAGCAAGGACGGTAAAAAGATGTGTACTCTGGAAGAGAGTTTGGTCGTGTAGTTACGAGAAATTTTTTGTTTTATTTCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA