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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCCGGCTCCGGAACTTCTCGGTCCACCTGCACCACCGACTGAATCTCCCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagcttatatcaacaatgttgatatttatctaccgtcacaagttcgagtatcaatgttaaaaataaccaatgagacatttcaaaacagtgaacatagattttcaatttttgttatattgatttagtaattacatattcgattaactaaaatgaaaatatggaattgaatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G37450.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125118236|gb|EL167039.1|EL167039
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
EST: gi|124710495|gb|EH801897.1|EH801897
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAG
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAG
EST: gi|125106682|gb|EL160071.1|EL160071
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGT
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGT
EST: gi|125275176|gb|EL289261.1|EL289261
EST:     GGACCTAACTCCGACGCTTTTTCTTCCCGGTCCTTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
genomic: GGACCTAACTCCGACGCTTTTTC-TCCCGGTCC-TTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
EST: gi|125023774|gb|EL096043.1|EL096043
EST:     TTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
genomic: TTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
EST: gi|125092448|gb|EL150271.1|EL150271
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCG
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCG
EST: gi|86085948|gb|DR381707.1|DR381707
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCYTTCCGCCGACGATCAG                         AGCGGAGCAGC
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGC
EST: gi|125041617|gb|EL113886.1|EL113886
EST:     GCTTTTTCTTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
genomic: GCTTTTTC-TCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
EST: gi|124722030|gb|EH813432.1|EH813432
EST:     CGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTG
genomic: CGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTG
EST: gi|124766430|gb|EH856560.1|EH856560
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCCTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAG
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAG
EST: gi|124798029|gb|EH887708.1|EH887708
EST:     CTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
genomic: CTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTT
EST: gi|124857281|gb|EH941718.1|EH941718
EST:     CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAG                         AGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGT
genomic: CCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGgtacattagc ... ttgaatgcagAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGT