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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATATTCAGCATGTTGATGCTAGATGGAAGGTTCCCATTGTACTTCCACTTCGAGATTGTGTTCGACTGGAAATAACTAGACTCTGCCTTTTGGATGGgttcgtttattggctgcctagtctacattgtattgttatagtgaaccttattcttgcataatccaactattgagtgacgtcacatattctgggcagggcag

Basic information

species Arabidopsis thaliana
transcript AT4G35910.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35910.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G29320.1 (Glycine max), 5'ss of exon 4
CAGATATTCAGCATGTTGATGCTAGATGGAAGGTTCCCATTGTACTTCCACTTCGAGATTGTGTTCGACTGGAAATAACTAGACTCTGCCTTTTGGATGGgttcgt---ttattggctgcctagtctacattgta--ttgttatagtgaaccttattcttgcat---aatccaactattgagtgacgtcacatattctgggcagggcag----------------------------------------------------------------------------
||||||| ||| ||||||||||||||||| | |||||  |||||||||| || || |||||| ||   |  || || |  |  || ||||   | |||||||| ||       |   |   |  |  |||||| |  |  | | | |   | || ||  |   |     |  |  | |||    |   | |||  | |     |                                                                                 
CAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtcctctacatatgtcataaacattgaagataataaaaattggcattttttgtttgttctgttttatgttttgtaaaattccgcattatttttcttgtatgatcttttctatgtttgtccggctgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacag