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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgttttcacaagttctttggattcgtattgctatttttgagcttttggattactagttgtaatgttaattggagtttctggtgaggataatttatgttttgacaggttatttggtgtttttgacattaagatgttgtgtgacatttattttgcagCCTGGAGTTATGGGGACACATGATGAGGAGACTAGGAAGTTCTTCAAGCATTCTTCTGTGATATGCGTTTTGTCACCCCGGTATGCCAGCAGTAAGCTTG

Basic information

species Arabidopsis thaliana
transcript AT4G35790.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054672|gb|DR350429.1|DR350429
EST:     TACTTGTATGGGATGATAAGACTTCTCATGATAAGTTTGGGATAAAAACG                         CCTGGAGTTATGGGGACACATGATGAGGAGACTAGGAAGTTCTTCAAGCAT
genomic: TACTTGTATGGGATGATAAGACTTCTCATGATAAGTTTGGGATAAAAACGgttagtgttt ... tattttgcagCCTGGAGTTATGGGGACACATGATGAGGAGACTAGGAAGTTCTTCAAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaggttatttggtgtttttgacattaagatgttgtgtgacatttattttgcagCCTGGAGTTATGGGGACACATGATGAGGAGACTAGGAAGTTCTTCAAGCATTCTTCTGTGATATGCGTTTTGTCACCCCGGTATGCCAGCAGTAAGCTTG
                 ttttgac  putative branch site (score: 3)
                                           tttatttt  putative PPT
                                        acatttatttt  TA-rich tract