1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTATTTCTCCACCTCTACAAACATGTGGATCTTTCAAGTGCCAATTACCAACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGgtaagctagcaatcaacgacgagaatcgccttctctatctgattttagattatgaataaatattaaatctgagtattaacttcttgctcaag
species | Arabidopsis thaliana |
transcript | AT4G35770.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATG GAGGAAAGCAACGACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTAAEST: gi|152035270|gb|BP849215.2|BP849215
genomic: ACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGgtaagctagc ... cttgctcaagGAGGAAAGCAACGACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTAA
EST: ACACGAAGAGGTGTCATTGTAGCTGATCTTCGAAACTCAAACTTCCGATG GAGGAAAGCAACGACAACAAGCAGAGGAAACTGTCGCAGCAGAGGCAGTTAEST: gi|125319440|gb|EL333525.1|EL333525
genomic: ACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGgtaagctagc ... cttgctcaagGAGGAAAGCAACGACAACAAGCAGAGGAAA-TGTTGCAGCAGAGGCAGTTA
EST: ACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATG GAGGAAAGCAACGACAACAAGEST: gi|124849867|gb|EH934304.1|EH934304
genomic: ACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGgtaagctagc ... cttgctcaagGAGGAAAGCAACGACAACAAG
EST: TGTAGCTGATCTTCGAAACTCAAACTTCCGTATG GAGGAAAGCAACGACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTA
genomic: TGTAGCTGATCTTCGAAACTCAAACTTCCG-ATGgtaagctagc ... cttgctcaagGAGGAAAGCAACGACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTTCTCCACCTCTACAAACATGTGGATCTTTCAAGTGCCAATTACCAACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGgtaagctagcaatcaacgacgagaatcgccttctctatctgattttagattatgaataaatattaaatctgagtattaacttcttgctcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT