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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcagttttgacattcagagactaaataaacccctatgaagacaatcccttgtttcacaaaatctctgatgcacgtaataaactacttctgcagGGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCTTCTCACTGCTGTATGTGTGTAATATCACTTCAATTTATATAGCCGTTATCCGGTTT

Basic information

species Arabidopsis thaliana
transcript AT4G35770.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125027194|gb|EL099463.1|EL099463
EST:     TTCTAAGACAGGTCTCGTCCCACTTCAGGAAACACGATGAAATCATAATC                         GGTTGTGAGAGCGGTCAAATGTCATTTAT
genomic: TTCTAAGACAGGTCTCGTCCCACTTCAGGAAACACGATGAAATCATAATCgtaagtttca ... acttctgcagGGTTGTGAGAGCGGTCAAATGTCATTTAT
EST: gi|124952694|gb|EL027944.1|EL027944
EST:     AAACACGATGAAATCATAATC                         GGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCTTCTCACT
genomic: AAACACGATGAAATCATAATCgtaagtttca ... acttctgcagGGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCTTCTCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaatcccttgtttcacaaaatctctgatgcacgtaataaactacttctgcagGGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCTTCTCACTGCTGTATGTGTGTAATATCACTTCAATTTATATAGCCGTTATCCGGTTT
                        ctctgat  putative branch site (score: 4)
                                           ctacttct  putative PPT
                                    taataaacta  TA-rich tract