1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaataaggttcctcaattcatttgaaacttttcggtgtagatgctgcattggagatgatactggtttttcttaaccttttctcttgcttgacctggcagGGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGTCTTGCTTTGTAACTCTTCTGAGCTGACCAGGGTGATTTCAATTTGTTTC
species | Arabidopsis thaliana |
transcript | AT4G35440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGGGGTCCTGGATAGAGAATGTATCACNCTAACACGCAG GGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGTEST: gi|124910290|gb|EH984370.1|EH984370
genomic: GTTGGGGTCCTGGATAGAGAATGTATCACTCTAACACGCAGgtaaacctgc ... gacctggcagGGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGT
EST: TCACTCTAACACGCAG GGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGT
genomic: TCACTCTAACACGCAGgtaaacctgc ... gacctggcagGGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGT
tgcattggagatgatactggtttttcttaaccttttctcttgcttgacctggcagGGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGTCTTGCTTTGTAACTCTTCTGAGCTGACCAGGGTGATTTCAATTTGTTTC
ccttttctcttgcttg CT-rich tract
tttttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaataaggttcctcaattcatttgaaacttttcggtgtagatgctgcattggagatgatactggtttttcttaaccttttctcttgcttgacctggcagGGCTCTAGCAACCAGAATGTACCTCCTAAATTCGCTGTATCTGTAAATGGTCTTGCTTTGTAACTCTTCTGAGCTGACCAGGGTGATTTCAATTTGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
caaataa
- - - - - - - caattca
- - - - - - - - - - - ttgaaac