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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattgattttaatgcaacctcttcgaggtctcctaagagacactttaaccctgatgatgttgaaactacaccaaaccagcaacttgttatatctcctccagttgataatgagctagaagacctcattgacattgatcttgattttgatattgataaaatactaaatccgcttcttgtagCATCTCACACCGGTTATGAGCAAGAAGAACATATTAACTCTGACATTGATACAGCATCTGCCCAGCTTCCTGTTATATCTCCAACTAGTACAGTACGAGT

Basic information

species Arabidopsis thaliana
transcript AT4G33280.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgacattgatcttgattttgatattgataaaatactaaatccgcttcttgtagCATCTCACACCGGTTATGAGCAAGAAGAACATATTAACTCTGACATTGATACAGCATCTGCCCAGCTTCCTGTTATATCTCCAACTAGTACAGTACGAGT
                                  tactaaa  putative branch site (score: 1)
                                         tccgcttctt  CT-rich tract
             ttgattttgatattga  TA-rich tract