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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacaccatccatccatgctttatatgttgtgtcattgtgtttaaaaatattaatttacggtttcaagtttcaagtttcaagtttcaagtttcttccttgttgtatcgtaaatccagatcaaaagatttattgattactaaatgccttgtgcaccgtctatttggtatgcatttaaacagATACATGGCTCCAGAATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGATGTATATTCCTTTGGGGTCGTGCTTCTAGAACTCATCACTGGACGTCCA

Basic information

species Arabidopsis thaliana
transcript AT4G32710.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32710.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA06G08610.1 (Glycine max), 3'ss of exon 6
gtaaaacaccatccatccatgctttatatgttgtgtcattgtgtttaaaaatattaatttacggtttcaagtttcaagtttcaagtttcaagtttcttccttgttgtatcgtaaatccagatcaaaagatttattgattactaaatgccttgtgcaccgtctatttggtatgcatttaaacagATACATGGCTCCAGAATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGATGTATATTCCTTTGGGGTCGTGCTTCTAGAACTCATCACTGGACGTCCA
                                                                          ||  ||  | ||| | |  | | ||  || ||| | |  ||    |   |    | |  |   | |  |   || ||   || |     ||| | ||    ||   ||| ||  | ||||| || || || || ||||||||| | || |||||||||||||||||||||| |||  || ||||| ||||||| || || |||| ||||
--------------------------------------------------------------------------cagtttgtatgttccta--tacatcaatgatgtgttgacaacgttgtctactgtactactatgtcaagagcagctttagtcaac-----tttagaatttcgttg--cagGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTATGGCATCATGCTTTTAGAACTTATAACCGGACATCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931385|gb|EL008747.1|EL008747
EST:     ATTCACTCATATCTCTACTCGAGTGGTAGGAACTTTCGG                         ATACATGGCTCCAGAATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGA
genomic: ATTCACTCATATCTCTACTCGAGTGGTAGGAACTTTCGGgtaaaacacc ... atttaaacagATACATGGCTCCAGAATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattgattactaaatgccttgtgcaccgtctatttggtatgcatttaaacagATACATGGCTCCAGAATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGATGTATATTCCTTTGGGGTCGTGCTTCTAGAACTCATCACTGGACGTCCA
          tactaaa  putative branch site (score: 1)
        attactaaat  TA-rich tract