Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116454130|gb|EG496722.1|EG496722EST: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAG GCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
genomic: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGgtatattttt ... aaatgtgtagGCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
EST:
gi|116454143|gb|EG496735.1|EG496735EST: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAG GCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
genomic: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGgtatattttt ... aaatgtgtagGCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
EST:
gi|164010785|gb|ES075447.1|ES075447EST: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAG GCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAG
genomic: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGgtatattttt ... aaatgtgtagGCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAG
EST:
gi|116454144|gb|EG496736.1|EG496736EST: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAG GCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
genomic: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGgtatattttt ... aaatgtgtagGCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
EST:
gi|116454129|gb|EG496721.1|EG496721EST: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAG GCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
genomic: ATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGgtatattttt ... aaatgtgtagGCGACACTGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGATACCACCGATTGTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGgtatatttttatttttaactctaaagaaactattattctctttgttttctttgtggggtcttataagttaattttctttttggaccaaatcttgaaatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC