Sequence
atgc intronic sequence ATGC exonic sequencegtttgttgttttatcaaatcgttcatgtggttctcttttcttaatatattgttacaacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC
Basic information
species | Arabidopsis thaliana |
transcript | AT4G31780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G31780.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0008g06920.t01 (Vitis vinifera), 3'ss of exon 3
gtttgttgttttatcaaatcgttcatgtggttctcttttcttaatat-attgtta--caacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC
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gtaggtt-ctacccataatgtttcctttgatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125105144|gb|EL158998.1|EL158998EST: CATCCTACATG GTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAA
genomic: CATCCTACATGgtttgttgtt ... tgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgtggttctcttttcttaatatattgttacaacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC
tttgtttt CT-rich tract
ttttcttaatatattg TA-rich tract