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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaatgtacaaataactcttgatttgttggcgttttaacaccatctacatggtctaacttttccaacttttataaaaatagGAAAGTTTCCAAGAAAAAAACATGTGAAGAAGAGGATTCCTGAAGCAGAAGCCAAGTCTTTTTCATCAGACAAGTCCTGTTTCGTTGCACATGTAACAGA

Basic information

species Arabidopsis thaliana
transcript AT4G31660.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcgttttaacaccatctacatggtctaacttttccaacttttataaaaatagGAAAGTTTCCAAGAAAAAAACATGTGAAGAAGAGGATTCCTGAAGCAGAAGCCAAGTCTTTTTCATCAGACAAGTCCTGTTTCGTTGCACATGTAACAGA
                         gtctaac  putative branch site (score: 2)
                                        cttttat  putative PPT
                                ttttccaacttttata  TA-rich tract