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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatcagtttgtatctgtgagtttgatagaaatgtattgttaggcttttcttctgattttgttgtttcattatgtatgattaattgaaactgaagGAAGTGCTTGGTGGAGCAGTGAATGCCTATATGATCAGTCAATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTG

Basic information

species Arabidopsis thaliana
transcript AT4G30993.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124748552|gb|EH838682.1|EH838682
EST:     CTCACTCAAGCAG                         GAAGTGCTTGGTTGGAGCAGTGAATGCCTATATGATCAGTCAATTGAAAGG
genomic: CTCACTCAAGCAGgtaggatcag ... gaaactgaagGAAGTGCTTGG-TGGAGCAGTGAATGCCTATATGATCAGTCAATTGAAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcttttcttctgattttgttgtttcattatgtatgattaattgaaactgaagGAAGTGCTTGGTGGAGCAGTGAATGCCTATATGATCAGTCAATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTG
                                     gattaat  putative branch site (score: 3)
                        tttcattatgtatgat  TA-rich tract