1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaaacacaggatacacaggaaactatacgcttcactgttaattggttgattgatgtgatttattggttctgttattgcagGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAA
species | Arabidopsis thaliana |
transcript | AT4G29810.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAA GTGCTTCAAGGAEST: gi|124859857|gb|EH944294.1|EH944294
genomic: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGA
EST: GTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATACCTTAGACAA GTGCTTCAAGGATTAATCTAEST: gi|124766042|gb|EH856172.1|EH856172
genomic: GTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCAT-CTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATCTA
EST: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAA GTGCTTCAAGGATTAATCTEST: gi|116419430|gb|EG462022.1|EG462022
genomic: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATCT
EST: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAA GTGCCTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGTEST: gi|125205517|gb|EL220471.1|EL220471
genomic: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGT
EST: CCCTGACTCCTATCTTTCTGCCATCTTTAGACAA GTGCTTCAAGGATTAATCEST: gi|124841317|gb|EH925754.1|EH925754
genomic: CCCTGACTCCTATCTTTCTGCCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATC
EST: AAAGCCATCCCTGACTCCTATCTTTCTGTCCATCTTTAGACAA GTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGEST: gi|124958740|gb|EL033463.1|EL033463
genomic: AAAGCCATCCCTGACTCCTATCTTTCTG-CCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCG
EST: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAA GTGCTTCAAGGATTAATCTATCTTCATCACGATAEST: gi|125003495|gb|EL075764.1|EL075764
genomic: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATCTATCTTCATCACGATA
EST: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAA GTGCTTCAAGGATTAATCTATCTTCATCAC
genomic: AGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGCCATCTTTAGACAAgtaagaaaca ... gttattgcagGTGCTTCAAGGATTAATCTATCTTCATCAC
tacgcttcactgttaattggttgattgatgtgatttattggttctgttattgcagGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAA
ttctgtt CT-rich tract
tgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaacacaggatacacaggaaactatacgcttcactgttaattggttgattgatgtgatttattggttctgttattgcagGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCATCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT