Sequence
atgc intronic sequence ATGC exonic sequencegtacgttcaactaactaaacggacttcacttgtataaataaaaactacatcctctgcttattacttaaaacattgctctgtttttatgaactcagcttttgtcaatcgaaaatctcttcctctgctttgaactgaaacaatgttctgttttaatctaaccacagGATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTAGATACTATGGACAGGATGTTCGAGGACACTATGCCTGTCTCAGGAAGAAACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G27670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124773062|gb|EH863191.1|EH863191EST: TGTCGAAAAAAGACCTCAGCAACGCTTAACCATGGACGTCTCTCCTTTCG GATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTA
genomic: TGTCGAAAAAAGACCTCAACAACGCTTAACCATGGACGTCTCTCCTTTCGgtacgttcaa ... ctaaccacagGATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTA
EST:
gi|19879129|gb|AU239960.1|AU239960EST: TGTCGAAAAAAGACCTCAACAACGCTTAACCATGGACGTCTCTCCTTTCG GATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTAGATA
genomic: TGTCGAAAAAAGACCTCAACAACGCTTAACCATGGACGTCTCTCCTTTCGgtacgttcaa ... ctaaccacagGATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTAGATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatctcttcctctgctttgaactgaaacaatgttctgttttaatctaaccacagGATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTAGATACTATGGACAGGATGTTCGAGGACACTATGCCTGTCTCAGGAAGAAACAG
atctaac putative branch site (score: 2)
ttttaatctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgttcaactaactaaacggacttcacttgtataaataaaaactacatcctctgcttattacttaaaacattgctctgtttttatgaactcagcttttgtcaatcgaaaatctcttcctctgctttgaactgaaacaatgttctgttttaatctaaccacagGATTGTTGGATCCTTTGTCACCAATGAGGACGATGCGACAAATGTTAGATACTATGGACAGGATGTTCGAGGACACTATGCCTGTCTCAGGAAGAAACAG
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