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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttactttacaaagtcaatctcatgatcttggtgtagattttttggtaattaatgaccatatatattgcttaactttataaaatgattgtgaataaagATGAAAGGAGAAGTACAGAATTGGATTGGAAGAAGAGAATGAACATTATCAATGGAGTAGCTCGTGGGATTCTCTATCTTCATCAAGATTCAAGATTGAG

Basic information

species Arabidopsis thaliana
transcript AT4G27300.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124774935|gb|EH865064.1|EH865064
EST:     AGTATATGCCTAACAAAAGTTTAGACTTCTTTATATTTG                         ATGAAAGGAGAAGTACAGAATTGGATTGGAAGAAGAGAATAGAACATTATC
genomic: AGTATATGCCTAACAAAAGTTTAGACTTCTTTATATTTGgtaagttctt ... gtgaataaagATGAAAGGAGAAGTACAGAATTGGATTGGAAGAAGAGAAT-GAACATTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtaattaatgaccatatatattgcttaactttataaaatgattgtgaataaagATGAAAGGAGAAGTACAGAATTGGATTGGAAGAAGAGAATGAACATTATCAATGGAGTAGCTCGTGGGATTCTCTATCTTCATCAAGATTCAAGATTGAG
                        gcttaac  putative branch site (score: 3)
               atatatattgcttaac  TA-rich tract