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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagttaaaaataatactcgacacttacttggaatttaaaactgagttggttttgaagaaatttttttctaattcttttgcagAAGAAGAAAAGACTCTTTATTAGTCTCTGTCTCTATGGACACAGATCTGATCAGCAATCTCCCCGATGATGTTCTTGGCAAAATCCTGTCTTTAGTTCCG

Basic information

species Arabidopsis thaliana
transcript AT4G27050.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063817|gb|DR359574.1|DR359574
EST:     ACTGCTGTCTAAGGAGTTTCCCTTGAGACATTCTGACTCTGACGTAAGAG                         AAGAAGAAAAGACTCTTTATTAGTCTCTGTCTCTATGGACACAGATCTGAT
genomic: ACTGCTGTCTAAGGAGTTTCCCTTGAGACATTCTGACTCTGACGTAAGAGgtaaaaagtt ... tcttttgcagAAGAAGAAAAGACTCTTTATTAGTCTCTGTCTCTATGGACACAGATCTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaatttaaaactgagttggttttgaagaaatttttttctaattcttttgcagAAGAAGAAAAGACTCTTTATTAGTCTCTGTCTCTATGGACACAGATCTGATCAGCAATCTCCCCGATGATGTTCTTGGCAAAATCCTGTCTTTAGTTCCG
                                      ttctaat  putative branch site (score: 2)
                                 tttttttctaattctt  CT-rich tract
                      ttttgaagaaattttt  TA-rich tract