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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataccattctctttatttagatctgatgaaacaaaggtcgaaactttataggtttgcttcttcatgtttttttttttgttgttcttctggttgtttcagAAACGAGAGGTTTGGGTGGGGAAGGAAAGAAGGAGGAAGAGGCAATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTTATTGG

Basic information

species Arabidopsis thaliana
transcript AT4G26400.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068206|gb|DR363963.1|DR363963
EST:     AGGAAGACATTTCTTCCCTCTGGATCTCCAAAAGTAAGAACATTTACAAG                         AAACGAGAGGTTTGGGTGGGGAAGGAAAGAAGGAGGAAGAGGCAATGTCAG
genomic: AGGAAGACATTTCTTCCCTCTGGATCTCCAAAAGTAAGAACATTTACAAGgtttgttttt ... gttgtttcagAAACGAGAGGTTTGGGTGGGGAAGGAAAGAAGGAGGAAGAGGCAATGTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttataggtttgcttcttcatgtttttttttttgttgttcttctggttgtttcagAAACGAGAGGTTTGGGTGGGGAAGGAAAGAAGGAGGAAGAGGCAATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTTATTGG
                                              ttgtttc  CT-rich tract
                ttcatgtttttttttt  TA-rich tract