1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagaccttatggaccaaacctgatacattttctgcttgaactgattagattggatattaactgtaatccacctttaacagATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAGACATGTACGGCTGATCAGCGTTTAACATTGTTCAGCCGAGTGAGAATGC
species | Arabidopsis thaliana |
transcript | AT4G25880.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATCATCAAAGAGATTGCAGGGCCTGACGAGAGCTATAATAGTCTATTG ATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAGEST: gi|116396135|gb|EG438727.1|EG438727
genomic: TCATCATCAAAGAGATTGCAGGGCCTGACGAGAGCTATAATAGTCTATTGgtgagacctt ... cctttaacagATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAG
EST: TCATCATCAAAGAGATTGCAGGGCCTGACGAGAGCTATAATAGTCTATTG ATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAG
genomic: TCATCATCAAAGAGATTGCAGGGCCTGACGAGAGCTATAATAGTCTATTGgtgagacctt ... cctttaacagATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAG
cattttctgcttgaactgattagattggatattaactgtaatccacctttaacagATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAGACATGTACGGCTGATCAGCGTTTAACATTGTTCAGCCGAGTGAGAATGC
tattaac putative branch site (score: 1)
tccaccttt putative PPT
atattaactgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaccttatggaccaaacctgatacattttctgcttgaactgattagattggatattaactgtaatccacctttaacagATGATGATGAAGGACCAGTATGGAAACTATGTGGTGCAGAAGATATTCGAGACATGTACGGCTGATCAGCGTTTAACATTGTTCAGCCGAGTGAGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT