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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTTGTTCACATGACCATCAATGTAGGTTCATTACCGAGGAGATACTGGAATCAGTCTGCGTCCTTTCCAAGGACCAATATGGTAATTATGTCACACAGgtatgtcatgccatttaaaacttacaaatcatttacaactgaagtcaaaataaacggactaaccagtaataaccgatgttggtatttggcag

Basic information

species Arabidopsis thaliana
transcript AT4G25880.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124905470|gb|EH979550.1|EH979550
EST:     TATGGTAATTATGTCACACAG                         CATGTCTTGGAGAAAGGGACATCTGAAGAAAGGGAGAGGATTGGGAGAAAA
genomic: TATGGTAATTATGTCACACAGgtatgtcatg ... tatttggcagCATGTCTTGGAGAAAGGGACATCTGAAGAAAGGGAGAGGATTGGGAGAAAA
EST: gi|116381297|gb|EG423889.1|EG423889
EST:     TCCAAGGACCAATATGGTAATTATGTCACACAG                         CATGTCTTGGAGAAAGGGACATCTGAAGAAAGGGAGAGGATTGGGAGAAAA
genomic: TCCAAGGACCAATATGGTAATTATGTCACACAGgtatgtcatg ... tatttggcagCATGTCTTGGAGAAAGGGACATCTGAAGAAAGGGAGAGGATTGGGAGAAAA