1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCAATGGAGCAGTATCTTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTgtgagttgtttgatcttgagggtttgaatatcacctggatgttttaatggcttttgaggtctgagaaacttttgactttgctctctcaacag
species | Arabidopsis thaliana |
transcript | AT4G24230.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACT GTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGEST: gi|124910147|gb|EH984227.1|EH984227
genomic: TTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTgtgagttgtt ... ctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG
EST: TGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACT GTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAEST: gi|164033118|gb|ES207814.1|ES207814
genomic: TGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTgtgagttgtt ... ctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCA
EST: TGCACTTGTCTCAAAGGAAATCCCTGGTTTTGACGAAAGCTGGTCATACT GTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG
genomic: TGCACTTGTCTCAAAGGAAATCCCTGG-TTTGACGAAAGCTGGTCATACTgtgagttgtt ... ctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCAATGGAGCAGTATCTTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTgtgagttgtttgatcttgagggtttgaatatcacctggatgttttaatggcttttgaggtctgagaaacttttgactttgctctctcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG