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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgtttgatcttgagggtttgaatatcacctggatgttttaatggcttttgaggtctgagaaacttttgactttgctctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAGGATCATTAGAAGATCCGACCAACTTAGTCACAACTGGTGTTGATGAAT

Basic information

species Arabidopsis thaliana
transcript AT4G24230.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164071488|gb|ES203582.1|ES203582
EST:     TTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACT                         GTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG
genomic: TTGCACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTgtgagttgtt ... ctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG
EST: gi|124910147|gb|EH984227.1|EH984227
EST:     TGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACT                         GTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCA
genomic: TGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTgtgagttgtt ... ctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCA
EST: gi|164033118|gb|ES207814.1|ES207814
EST:     TGCACTTGTCTCAAAGGAAATCCCTGGTTTTGACGAAAGCTGGTCATACT                         GTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG
genomic: TGCACTTGTCTCAAAGGAAATCCCTGG-TTTGACGAAAGCTGGTCATACTgtgagttgtt ... ctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgttttaatggcttttgaggtctgagaaacttttgactttgctctctcaacagGTAGGGAAGATGTCAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAGGATCATTAGAAGATCCGACCAACTTAGTCACAACTGGTGTTGATGAAT
                                ttttgac  putative branch site (score: 3)
                                      ctttgctctctc  CT-rich tract
                            aaactttt  TA-rich tract