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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgtcagggtctggcttctgttataacattctaatttgttgtgtacgttcttatttgaccactctctgttgtattcctaccttttaatctacag

Basic information

species Arabidopsis thaliana
transcript AT4G23000.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 4
CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgtcagggtctggcttctgttataacattctaatttgttgtgtacgttcttatttgaccac-tctctgttgtattccta----ccttttaatctacag
 ||  ||||| ||| ||| ||  | || ||||| ||||||||||| |||||||||||  ||||||||||  |  | ||||||||||| ||||||||||||||   |  ||||| ||  ||     |||||   || |  |||    |   |  |||| |  ||  ||||  | | ||     | | ||| ||| |||
TATGAATGAGTTAAAAGATCAGATATGTTCATCTTGGTTTGCTCCGGTTGGATCTGCTAGTGATTATCCTCTTCTATCCAAATGGGTTATCTATGGGGAGgtaccg--ctggcctcgattcatctattctttcttttcatgt----ttccagctgacaatatccatgttacacttctttgatcatgttattctccag

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 4
CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgtcagggtctggcttctgttataacattcta--atttgttgt-gtacgttcttatttgaccactctctgttgtattccta----ccttttaatctacag
 ||  || || | | |||  |  | || || || |||||||||||||||||||||||| |||| |||||  |  || | |||||||| ||||| |||||||| |  | ||| |||||  | ||    ||||  |||| | || | || ||||||      || ||  ||||| | | ||     | | ||  ||| |||
TATGAATCAGTTGAAAGATGAGATATGTTCGTCTTGGTTTGCTCCTGTTGGATCTGCAAGTGACTATCCTATTCTGGCAAAATGGGTTATCTACGGGGAGgt-actgcctg-cttctcctttattcatctattatttctagtcgcactttcttaaggtgaca-tccatgttgcacttctttgatcatgtttttctccag

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 3
CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgtcagggtctggcttctgttataacattctaatttgtt--gtgtacgttcttatttgaccactctctgttgtattcctaccttttaatctacag------------------------
 ||  | ||  | |  ||||| ||||||||||| |||||||| || |||||||||||| ||||||||||  | ||||| || ||||| || |||||||||||     |     |  || |||||   | | |||| |   || |||  |  || || |    ||| |||    |      ||||| ||     |                        
GATGAACGAATTGAAGGACCAGGTCTGCTCATCTTGGTTTGCACCAGTTGGATCTGCAAGTGATTATCCTCTCTTGTCAAAGTGGGTTATTTATGGGGAGgt---acttaatataatgatataattatttgatttatacagtctactgttgtaattcatatatctatgtccattctggttcttttcatggtttgatgccaaaattatttttgtattag

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 3
CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgt---cagggtctggcttctgttataacattc---taatttgttgtgtacgttcttatttgaccactctctgttgtattcctaccttttaatctacag-----------------
 ||  | ||  | | |||||| || |||||||| |||||||| || |||||||||||| ||||||||||  | ||||| || ||||| || ||||| |||||    |   |   | |    ||||   |||     | |  | |||     ||| ||| |     |  | || |   || |    ||| |  | | |                  
GATGAACGAATTGAAAGACCAGGTTTGCTCATCTTGGTTTGCACCAGTTGGATCTGCAAGTGATTATCCTCTCTTGTCGAAGTGGGTTATTTATGGCGAGgtacttaatataatgatataattatttgatttatgcagtcagctgtcgtaattcatatctatgtccattttggttctttacatggtttgatgccaaaattatttttatgtattag

upper sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 4
CATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGgtcagggtctggcttctgttataacattctaatttgttgtgtacgttcttatttgaccactctctgttgtattcctaccttttaatctacag
|||  ||||| | | ||| || ||||||||||| ||||||||||| ||||| |||||  ||||||| ||  | |||||||| ||||| || |||||||||||       | |   |  || | |  || || | |||  |||  ||||| ||||      || ||  |   ||  |   |||   |   |||
CATGAATGAGTTGAAAGATCAGGTCTGCTCATCTTGGTTTGCTCCAGTTGGTTCTGCCAGTGATTACCCGCTTTTGTCCAAGTGGGTTATTTATGGGGAGgt--accattagaagccattctga-gttttattatgtc-tgttagttctcattttttttgtcacttat-cgttattttttttgctttctcag