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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatctttaaattaatttgtctcctaacggtttagcttgtaaatatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G22410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 3
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgta---atcctt----tctctttgattacacttgatctttaaattaatttgtctcctaacggtttagcttgtaaatatgtag-------------------
|||||  | ||  || ||     | ||||| | ||| | |||||||||||| ||||||||||||||| | ||||| || |||||||||   || | |        |   ||    ||| |   |  || | |||  | |||||  |   || | |||     |||                     
GTTTACAACAGAGCAGGTTCGTAATCTTGATAGGAACAAGCAGTGGTCTAGAGCTCTTGATGGCTCCAATTATCTACCTGGAATGgtatgtatacgtgaaactaatacaatggttcttaaatgtataaatgattcttttcctagggacataacctgtttgc-tgttccctgttaattaagggaatt

upper sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 3
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacactt-gatctttaaattaatttgtctc--ctaacggtttagctt--gtaaatatgtag---------------------
||| | ||  |  || ||     | |||||||| |||| |||||||||||| || |||||||||||| | ||||| || ||||||||| |   | ||      | ||||   |  | ||| || |  |||| |    || | | |   |||  ||   ||||                        
GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATGgta-tgtatccttaaaattgacacaaaggcccttatatgatcttgtttgggttacctgctgcacttccgttgctatgctttggaatcttccttagccaatt

upper sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 4
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatctttaaattaatttgtctcctaacggtttagcttgtaaatatgtag--------
 || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||  | ||||      || | | |   |    ||     || |   |||| |  |||| |   |  || |||          
ATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATGgtatacttttcatgcctataaaaatgttttggaaaggctgttaggggccta-caatttatccattgtat-tgtgacttttcag

upper sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 4
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatctttaaattaatttgtctcctaacggtt-----tagcttgtaaatatgtag----------
 ||   |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||    ||||    | ||   | |  |  ||  | ||    | | |   || || |       || |  || | | | |          
ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtatatttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcag