1 5' 3' |
CAAAACATTGAACCGTGGAATCTCTGAGTTCGTTGTTATGGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGgttaccatctctttctctctctcgatgatttggttgcaattttaattcaactcgtgtagaatagagagctattaggttgcaatttttgaggctgtgtatc...
species | Arabidopsis thaliana |
transcript | AT4G22380.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAG AATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGTEST: gi|164157259|gb|ES029943.1|ES029943
genomic: CTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGgttaccatct ... ctaaatgcagAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGT
EST: GAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAG AATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGTEST: gi|86082006|gb|DR377765.1|DR377765
genomic: GAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGgttaccatct ... ctaaatgcagAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGT
EST: CTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAG AATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGTEST: gi|164159153|gb|ES136642.1|ES136642
genomic: CTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGgttaccatct ... ctaaatgcagAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGT
EST: TCTTCCTTTGCTTGCCGAAGATAAG AATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGT
genomic: TCTTCCTTTGCTTGCCGAAGATAAGgttaccatct ... ctaaatgcagAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAACATTGAACCGTGGAATCTCTGAGTTCGTTGTTATGGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGgttaccatctctttctctctctcgatgatttggttgcaattttaattcaactcgtgtagaatagagagctattaggttgcaatttttgaggctgtgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaataga