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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatcttgaaattaatgtctcctaaaggttaagcttgtaaatatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G22350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22350.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 3
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgta-atcctttctctttgattacacttgatcttgaa---attaatg-----tctcctaaaggttaagcttgtaaatatgtag-------------------
|||||  | ||  || ||     | ||||| | ||| | |||||||||||| ||||||||||||||| | ||||| || |||||||||  |            | |||| | | |||| ||   || ||||     | |||||  |    | | |||     |||                     
GTTTACAACAGAGCAGGTTCGTAATCTTGATAGGAACAAGCAGTGGTCTAGAGCTCTTGATGGCTCCAATTATCTACCTGGAATGgtatgtatacgtgaaactaatacaatggttcttaaatgtataaatgattcttttcctagggacataacctgtttgc-tgttccctgttaattaagggaatt

upper sequence: AT4G22350.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 3
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatcttgaaattaatgtctcctaaaggttaagc-ttgtaaatatgtag-----------------------------
||| | ||  |  || ||     | |||||||| |||| |||||||||||| || |||||||||||| | ||||| || ||||||||| |   | ||      | ||||     |    |  | || |    |   |||||     || |  |  || |                             
GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATGgta-tgtatccttaaaattgacacaaaggcccttatatgatcttgtttg--ggttacctgctgcacttccgttgctatgctttggaatcttccttagccaatt

upper sequence: AT4G22350.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 4
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatcttgaaattaatgtct----cctaaaggttaagc------ttgtaaatatgtag
 || | |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||  | ||||      || | | |   | ||| ||    |||      |||| |  |||  |      |||| | | |  ||
ATTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCCGGAATGgtatacttttcatgcctataaaaat--gttttggaaaggctgttaggggcctacaatttatccattgtattgtgacttttcag

upper sequence: AT4G22350.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 4
GTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGgtaatcctttctctttgattacacttgatcttgaaatt--aatgtctcctaaaggtta-----agcttgtaaatatgtag----------
 ||   |  |  | ||||  |  | |||||||| |||| |||||||||||||||||||||||| ||    || ||||| |||||||||    ||||    | ||   | |  |  ||  | ||   || | |   ||||| ||      || |  || | | | |          
ATTCGCTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCTCTTGATGGTTCTAGTTACCTTCCTGGAATGgtatatttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcag