Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcctttttgcaaattcagtcgaatcataatattacaaacaaatgctgtcagagttatatgcatttgaggctactactctatctactctggactctggaggtttgattagtgtatagtagcaacacaagagtatggctaatctttatgtggattatgattttcgcagCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTGGTACCATAACAAATCAAATTTGCACCAT

Basic information

species Arabidopsis thaliana
transcript AT4G21600.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125105177|gb|EL159021.1|EL159021
EST:     CTCTCTTGTTCTTGTCACATTATATGGGAGATGTTCATCAG                         CCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTC
genomic: CTCTCTTGTTCTTGTCACATTATATGGGAGATGTTCATCAGgttagtcctt ... attttcgcagCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagtagcaacacaagagtatggctaatctttatgtggattatgattttcgcagCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTGGTACCATAACAAATCAAATTTGCACCAT
                      ggctaat  putative branch site (score: 3)
                                              ttttcgc  putative PPT
                                       attatgatttt  TA-rich tract