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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTAAAGTCATAGGACGTTTGGGAATAGAGAAGACTATGTTTGAAGCATCTGATGCGAAGTTGGTTGAGTGGTTCATCAAACGTTATGGTCCAAATgtatttgctgatactctagtcctctctattatttttaaccttctgtttgaatggtcaccctcacaagattcatatctcttcgtcttggtttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G21320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G30630.1 (Glycine max), 5'ss of exon 5
AATTGCTAAAGTCATAGGACGTTTGGGAATAGAGAAGACTATGTTTGAAGCATCTGATGCGAAGTTGGTTGAGTGGTTCATCAAACGTTATGGTCCAAATgtatttgct------gatactctagtcctctctattatttttaaccttctgtttgaatggtcaccctcacaagattcatatct--cttcgtcttggtttttcag
 ||||| ||  ||||||| ||  | || || |||||||||||||||||||||||  ||  ||   |    ||||||||||||||||  |||||||||||||||  ||||       | |   ||   ||    ||  |||    | ||  | ||   |     |       | |||  ||| |  ||| ||   |         
CATTGCCAAGATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAAGCATCAAATCAGAGAATATCCGAGTGGTTCATCAAACAATATGGTCCAAATgtaaatgctctactaaacaacttaaatcttgtcatagtttcc--cttttcgcttatgttacagcttcattgacattattatttggctttgttcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799692|gb|AU230982.1|AU230982
EST:     CATCTGATCCGAAGTTGGTTGAGTGGTTCATCAAACGTTATGGTCCAAAT                         CTGAATCTCTATGTGGATCATTCTCAGATTATG-ATCTCGAGTGCCTCCGT
genomic: CATCTGATGCGAAGTTGGTTGAGTGGTTCATCAAACGTTATGGTCCAAATgtatttgctg ... ggtttttcagGTGAATCTCTATGTGGATCATTCTCAGATTATGGATCTCGAGTGCCTCCGT