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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaactgaataataagtttagaagattcttgatttttccatctgctatgagctgagaacaccattaatttctgtgtccaactgttgctttttgcagTGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGATCCTGTGGCATGCATTCTACTACATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTT

Basic information

species Arabidopsis thaliana
transcript AT4G20760.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087463|gb|DR383222.1|DR383222
EST:     ACTTGGTGGTTGGCACTCTTACAGGGCTTCAAAATCCGCACTCAATCAAC                         TGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGATCCTGTGGCAT
genomic: ACTTGGTGGTTGGCACTCTTACAGGGCTTCAAAATCCGCACTCAATCAACgtacaactga ... ctttttgcagTGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGATCCTGTGGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctatgagctgagaacaccattaatttctgtgtccaactgttgctttttgcagTGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGATCCTGTGGCATGCATTCTACTACATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTT
                    cattaat  putative branch site (score: 3)
                                          ttgcttttt  putative PPT
                     attaatttct  TA-rich tract