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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcagtgaatgaacaggactcttgtctcggctttttactgtttttgtcgctgttttcttgagattatgaaggctttaagatgtttgattgaacttcctcagGTTTACGGTATCGTGCTATCATGTTGCCTTTCATTGACTTTAGCCGCAATTTCTCATCTATCTTAGCTTTCAAAGTTTGTAGATTTGTTGACGAGTGAGT

Basic information

species Arabidopsis thaliana
transcript AT4G20440.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164183136|gb|ES091084.1|ES091084
EST:     TGCTCCACCGCGTCCTGGCATGCCACCACATAATCAGCAGCAGTGATTAG                         GTTTACAGTATCGTGCTA
genomic: TGCTCCACCGCGTCCTGGCATGCCACCACATAATCAGCAGCAGTGATTAGgttagcagtg ... acttcctcagGTTTACGGTATCGTGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctgttttcttgagattatgaaggctttaagatgtttgattgaacttcctcagGTTTACGGTATCGTGCTATCATGTTGCCTTTCATTGACTTTAGCCGCAATTTCTCATCTATCTTAGCTTTCAAAGTTTGTAGATTTGTTGACGAGTGAGT
                                   gtttgat  putative branch site (score: 5)
                                              cttcctc  putative PPT
                attatgaa  TA-rich tract